If you’ve ever wanted a dessert that’s creamy, tangy, fruity, and delightfully mini, then these Blackberry Lime Cheesecake Cupcakes are your answer. Inspired by the full-sized classic cheesecake, these cupcakes are a flavor-packed twist that combines zesty lime with sweet blackberry in a soft, velvety filling over a buttery graham cracker crust.
I first made them for a summer garden party, and let me tell you—there were zero leftovers. With their vibrant colors and perfect balance of tart and sweet, these cupcakes are elegant enough for parties yet easy enough for weekday baking.
Let’s dive into the flavors, techniques, and tips that will make this recipe your next favorite.
Why These Cheesecake Cupcakes Stand Out
These are not just cheesecake bites. They’re:
- Bursting with fresh blackberry jam and juicy berries
- Balanced by the citrus brightness of real lime juice and zest
- Perfectly portioned, making them ideal for events and gifting
- Creamy and rich, with a surprisingly light finish
Their stunning contrast of deep purple swirls and bright green zest also makes them visually irresistible. And yes, they taste even better than they look.
Ingredients You’ll Need
Here’s a breakdown of everything you need:
Crust
- 1 cup graham cracker crumbs
- ¼ cup melted unsalted butter
Filling
- 16 oz cream cheese (softened)
- ½ cup granulated sugar
- 2 large eggs
- 1 tsp vanilla extract
- ¼ cup fresh lime juice
Fruit Swirl & Topping
- ½ cup blackberry jam
- ½ cup fresh blackberries
- ½ cup heavy cream (for whipped topping)
- Zest of 1 lime
- Extra blackberries and lime zest for garnish

Optional Substitutions:
- Use gluten-free graham crackers for a GF version
- Swap in dairy-free cream cheese and coconut cream for a dairy-free option
Step-by-Step Instructions
1. Prep the Crust
Preheat oven to 325°F (160°C) and line a muffin tin with 12 cupcake liners. Combine graham crumbs and butter, then press a spoonful into each liner. Bake for 5 minutes and cool slightly.
2. Make the Cheesecake Batter
In a large bowl, beat cream cheese and sugar until fluffy. Add eggs one at a time. Mix in vanilla and lime juice. The batter should be smooth and lump-free.
3. Assemble the Cupcakes
Add a teaspoon of blackberry jam over each crust, then pour cheesecake batter on top. Gently swirl another bit of jam through the top layer using a toothpick.
4. Bake
Bake for 20–25 minutes until centers are set but slightly jiggly. Cool completely at room temperature, then chill in the fridge for at least 2 hours.
5. Whip & Decorate
Whip heavy cream into stiff peaks. Pipe or spoon onto chilled cupcakes. Top with fresh blackberries and a sprinkle of lime zest.

Expert Baking Tips
- Room Temp Cream Cheese: Essential for a smooth batter. Cold cheese causes lumps.
- Avoid Overmixing: Too much air = cracks during baking.
- Use Real Lime Juice: Bottled juice lacks the zing and aroma of fresh limes.
- Chill Thoroughly: Refrigeration is what sets the final texture.
Serving Suggestions
These cupcakes are best served cold with:
- A glass of sparkling water with lime
- A cup of earl grey tea or cold brew coffee
- A drizzle of extra blackberry syrup on the plate for restaurant-style plating
For a festive event, serve them on a white platter scattered with mint leaves and extra berries.
Storage & Leftovers
Storage Type | How Long | Notes |
---|---|---|
Refrigerated | 4 days | Store in airtight container |
Frozen (No Topping) | 1 month | Freeze before adding whipped cream |
To repurpose leftovers, crumble over vanilla ice cream or layer in parfait glasses for a no-bake trifle.
Nutritional Info (Per Cupcake – Approximate)
- Calories: 280
- Carbs: 22g
- Fat: 20g
- Protein: 3g
- Fiber: 1g
- Sugar: 14g
Related Dessert Inspirations
If you love fruity and creative desserts, don’t miss these from our collection:
- The pistachio and cherry cheesecake is another layered beauty bursting with flavor.
- Our Pistachio Tart with Creamy Pistachio Paste offer another delicious single-serve dessert for parties.
- For something more exotic, try the Simple 3-Ingredient Mango Mochi —moist, nutty, and gluten-free.
Frequently Asked Questions (FAQs)
Can I use frozen blackberries?
Yes, just thaw and drain first to avoid excess moisture.
Can I substitute lemon for lime?
Absolutely! The flavor will be slightly different but still fresh and tangy.
How do I know when they’re done baking?
They should have a slight jiggle in the center. They’ll firm up while cooling.
Can I make these ahead of time?
Yes, up to 2 days ahead. Just store covered in the fridge until serving.
Final Thoughts
Blackberry Lime Cheesecake Cupcakes are the ultimate example of what happens when bold fruit meets rich creaminess in a fun, manageable form. Whether you’re baking for a special occasion or just treating yourself midweek, these cupcakes never disappoint.
They’re flavorful, gorgeous, and surprisingly easy to make. Plus, the lime and blackberry pairing keeps everything bright and refreshing.